PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0041100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 289aa    MW: 32069.8 Da    PI: 10.3698
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0041100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11158200855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r rrRR+++N++f   r+l+P+      +K++Ka+iL  +++Y k+Lq
  Spipo6G0041100 158 RTRRRREKLNQRFLAFRSLVPSV-----TKVDKASILGDTIDYYKQLQ 200
                     569*******************8.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.386150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-13156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14157217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8159200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14160217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-9160204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MCISFSYLPG IGVLMHVRLL PPLSAAALFL AIAKISGKAF KTQRPLWLSG ANGVDSKVQE  60
DPDLTRQVKN VFRAAAAATM PSRRASEESR VEDLEMPEEP KLNVTAVEKG APPEDCSDYG  120
GLLEHRRRSA FSAWRPRKVP IVMQQGGSSQ EILKLVLRTR RRREKLNQRF LAFRSLVPSV  180
TKVDKASILG DTIDYYKQLQ RRTEEYEARI RQMESEKTTT APKVFASDGG EQMTNPRRRS  240
QASDVTTRAG SKRQRASCNG GELVNGGSLH MSVIDTDVLV EMKCQTGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-15bHLH family protein